YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX2_MAIZE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRLLECRF FTIALCDAAE PWQLGFQDAA TPMMQGIIDL HHDIFFFLIL ILVFVLWMLV  60
   61 RALWHFNEQT NPIPQRIVHG TTIEIIWTIF PSVILLFIAI PSFALLYSMD GVLVDPAITI 120
  121 KAIGHQWYWT YEYSDYNSSD EQSLTFDSYM IPEDDLELGQ LRLLEVDNRV VVPAKTHLRM 180
  181 IVTSADVLHS WAVPSLGVKC DAVPGRLNLT SILVQREGVY YGQCSEICGT NHAFMPIVVE 240
  241 AVTLKDYADW VSNQLILQTN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.69
Transmembrane Helix	10	24	0.29
Non-Cytoplasmic	25	43	0.46
Transmembrane Helix	44	65	0.92
Cytoplasmic	66	84	0.47
Transmembrane Helix	85	107	0.87
Non-Cytoplasmic	108	260	0.51