YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHPAQLGFQ DAASPVMEEL LCFHDHALMI VFLISTLVLY IIIAMVSTKL TNKFILDSQE  60
   61 IEIVWTVLPA IILILIALPS LRILYLMDEI NDPHVTIKAV GHQWYWSYEY TDYENLEFDS 120
  121 YMVPTQDLTP GGFRLLETDH RMVVPKESPI RILVSAEDVL HSWAVPSLGI KMDAVPGRLN 180
  181 QTAFIVSRPG VFYGQCSEIC GANHSFMPIV VEAVPLEFFE NWSSAMLEDA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.60
Transmembrane Helix	21	46	0.81
Non-Cytoplasmic	47	62	0.54
Transmembrane Helix	63	86	0.85
Cytoplasmic	87	230	0.60