YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8573375, gi\|6...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	36	0.96
Non-Cytoplasmic	37	58	0.87
Transmembrane Helix	59	82	0.91
Cytoplasmic	83	100	0.87
Transmembrane Helix	101	122	0.89
Non-Cytoplasmic	123	145	0.87
Transmembrane Helix	146	168	0.90
Cytoplasmic	169	181	0.92
Transmembrane Helix	182	205	0.91
Non-Cytoplasmic	206	235	0.88
Transmembrane Helix	236	257	0.87
Cytoplasmic	258	269	0.81
Transmembrane Helix	270	290	0.93
Non-Cytoplasmic	291	301	0.88
Transmembrane Helix	302	324	0.88
Cytoplasmic	325	335	0.83
Transmembrane Helix	336	358	0.92
Non-Cytoplasmic	359	373	0.92
Transmembrane Helix	374	398	0.87
Cytoplasmic	399	407	0.93
Transmembrane Helix	408	430	0.86
Non-Cytoplasmic	431	450	0.86
Transmembrane Helix	451	472	0.93
Cytoplasmic	473	512	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRQWLFSTN HKDIGTLYFI FGAWAGMVGT SLSILIRAEL GHPGALIGDD QIYNVIVTAH  60
   61 AFIMIFFMVM PIMIGGFGNW LVPLMLGAPD MAFPRMNNMS FWLLPPALSL LLVSSMVENG 120
  121 AGTGWTVYPP LSAGIAHGGA SVDLAIFSLH LAGISSILGA VNFITTVINM RSTGISLDRM 180
  181 PLFVWSVVIT ALLLLLSLPV LAGAITMLLT DRNLNTSFFD PAGGGDPILY QHLFWFFGHP 240
  241 EVYILILPGF GMISHIISQE SGKKETFGSL GMIYAMLAIG LLGFIVWAHH MFTVGMDVDT 300
  301 RAYFTSATMI IAVPTGIKIF SWLATLHGTQ LSYSPAILWA LGFVFLFTVG GLTGVVLANS 360
  361 SVDIILHDTY YVVAHFHYVL SMGAVFAIMA GFIHWYPLFT GLTLNNKWLK SHFIIMFIGV 420
  421 NLTFFPQHFL GLAGMPRRYS DYPDAYTTWN IVSTIGSTIS LLGILFFFFI IWESLVSQRQ 480
  481 VIYPIQLNSS IEWYQNTPPA EHSYSELPLL TN