YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	37	0.94
Non-Cytoplasmic	38	59	0.87
Transmembrane Helix	60	83	0.90
Cytoplasmic	84	101	0.88
Transmembrane Helix	102	123	0.92
Non-Cytoplasmic	124	146	0.84
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	182	0.88
Transmembrane Helix	183	206	0.91
Non-Cytoplasmic	207	242	0.89
Transmembrane Helix	243	262	0.92
Cytoplasmic	263	270	0.81
Transmembrane Helix	271	292	0.91
Non-Cytoplasmic	293	302	0.90
Transmembrane Helix	303	327	0.83
Cytoplasmic	328	337	0.87
Transmembrane Helix	338	359	0.93
Non-Cytoplasmic	360	376	0.86
Transmembrane Helix	377	399	0.91
Cytoplasmic	400	408	0.87
Transmembrane Helix	409	431	0.86
Non-Cytoplasmic	432	451	0.86
Transmembrane Helix	452	473	0.92
Cytoplasmic	474	516	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTITRWFFST NHKDIGTLYL VFGAWAGMVG TALSLLIRAE LSQPGALLGD DQIYNVIVTA  60
   61 HAFVMIFFMV MPILIGGFGN WLVPLMIGAP DMAFPRMNNM SFWLLPPSFL LLLASSGVEA 120
  121 GAGTGWTVYP PLAGNLAHAG ASVDLTIFSL HLAGVSSILG AINFITTTIN MKPPTISQYQ 180
  181 TPLFVWAVLV TAVLLLLSLP VLAAGITMLL TDRNLNTTFF DPAGGGDPIL YQHLFWFFGH 240
  241 PEVYILILPG FGIISHVVAY YAGKKEPFGY MGMVWAMMAI GLLGFIVWAH HMFTVGMDVD 300
  301 TRAYFTSATM IIAIPTGVKV FSWLATLHGG AIKWETPMLW ALGFIFLFTV GGLTGIVLAN 360
  361 SSLDIVLHDT YYVVAHFHYV LSMGAVFAIM AGFVHWFPLF TGYTLNSVWT KIHFGVMFIG 420
  421 VNLTFFPQHF LGLAGMPRRY SDYPDAYALW NTVSSIGSLI SLVAVIMFLF ILWEAFTAKR 480
  481 EVLSVELTAT NVEWLHGCPP PYHTFEEPAF VQIQSN