YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CORA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSAFQLENN RLTRLEVEES QPLVNAVWID LVEPDDDERL RVQSELGQSL ATRPELEDIE  60
   61 ASARFFEDDD GLHIHSFFFF EDAEDHAGNS TVAFTIRDGR LFTLRERELP AFRLYRMRAR 120
  121 SQSMVDGNAY ELLLDLFETK IEQLADEIEN IYSDLEQLSR VIMEGHQGDE YDEALSTLAE 180
  181 LEDIGWKVRL CLMDTQRALN FLVRKARLPG GQLEQAREIL RDIESLLPHN ESLFQKVNFL 240
  241 MQAAMGFINI EQNRIIKIFS VVSVVFLPPT LVASSYGMNF EFMPELKWSF GYPGAIIFMI 300
  301 LAGLAPYLYF KRKNWL

Type	Start	End	Confidence
Cytoplasmic	1	254	0.94
Transmembrane Helix	255	277	0.87
Non-Cytoplasmic	278	289	0.85
Transmembrane Helix	290	310	0.95
Cytoplasmic	311	316	0.94