YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COPT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMNHMEMHH MGMNHTDDNI TMPPHQHPTT SASHSHEMMM PMTFYFGFKN VDLLFSSLVI  60
   61 NTPGEMAGAF VAVFLLAMFY EGLKIAREGL LRKSQVSIRY NSMPVPGPNG TILMETHKTV 120
  121 GQQMLSFPHL LQTVLHIIQV VISYFLMLIF MTYNGYLCIA VAAGAGTGYF LFSWKKAVVV 180
  181 DITEHCH

Type	Start	End	Confidence
Cytoplasmic	1	41	0.54
Transmembrane Helix	42	60	0.42
Non-Cytoplasmic	61	65	0.49
Transmembrane Helix	66	83	0.84
Cytoplasmic	84	128	0.80
Transmembrane Helix	129	148	0.76
Non-Cytoplasmic	149	152	0.46
Transmembrane Helix	153	173	0.83
Cytoplasmic	174	187	0.69