YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBT_CHLTE
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRFQQLLA SIKPVDMNLT STVKAHLDDL TKPQGSLGRL EEIVMKYCIA TGTTKPSLSK  60
   61 KKVFCFAGDH GVAAEGVSAF PAEVTPQMVY NMLGGGAAIN VLSRHAGADL EVVDMGVNHD 120
  121 FAEHPMLRRC KVKHGSANMA EGPAMSIEET LQAIMAGAEL AIEARNQGYE LLATGEMGIA 180
  181 NTTPATALYA TLLGLPVEAI TGRGTGIDDE RLHHKVAVIE KAIEVNRANL ATPLEVLAAL 240
  241 GGFEIAGICG LILGAASVGM PVVVDGFISS SAAVCAIKLS CTVSDYLFFS HLSNEQGHRA 300
  301 VMQKLGARPI LDLDLRLGEG TGAAMAMQVI EASVKIYNEM ATFSSAGVSG KND

Type	Start	End	Confidence
Cytoplasmic	1	235	0.67
Transmembrane Helix	236	258	0.71
Non-Cytoplasmic	259	266	0.66
Transmembrane Helix	267	289	0.51
Cytoplasmic	290	353	0.62