YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBS_VIBPA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESKSSRQA TLRYQMELFL LAVSFFSRLP VPSDLPYSEE RMNQAGRYFA LVGVILGVLC  60
   61 ALVFYFTQLI FPDSVAIVLT MAFSLLLTGA FHEDGLTDMA DGIGGGMTVE RRLSIMKDSR 120
  121 IGTYGAATLV MALLAKFVLW SELVHLPDFW LVIVVAYTTS RALAATLIYD MPYVSDSDTS 180
  181 KSKPLASKQS SSEVAILLFT AGVASLFLGV IQTSFIVIVL FAFRFAFKRW LTKRIGGFTG 240
  241 DCLGAAQQLS ELLVYLTLIA FYQNI

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	31	0.65
Non-Cytoplasmic	32	44	0.64
Transmembrane Helix	45	67	0.89
Cytoplasmic	68	73	0.56
Transmembrane Helix	74	92	0.86
Non-Cytoplasmic	93	120	0.60
Transmembrane Helix	121	140	0.95
Cytoplasmic	141	148	0.56
Transmembrane Helix	149	168	0.66
Non-Cytoplasmic	169	200	0.86
Transmembrane Helix	201	225	0.88
Cytoplasmic	226	265	0.69