YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBS_LEPIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLQEEWNR FCASWMFNTR LPILPFYVYS ESTLSRSSRY FPLIGWIVSA GTSYSTYFLS  60
   61 WILPIEISII LGMILSVLIT GGFHEDGLAD VCDAFGGGWS KEKILEIMKD SRIGTFGSIG 120
  121 LILSLGLKYL LLVNLFKISP WIFLFTSWFS HSASRWFALL LMMLIPYARE NDLSKSKPMI 180
  181 KKLPPFDFAL STFFGCFPAV YFLYQFQNQI PNVLLGFFLS SIFVFYFRNY FNKWIEGFTG 240
  241 DCLGFIQQGT ELLFYLGITV SWNSI

Type	Start	End	Confidence
Cytoplasmic	1	39	0.65
Transmembrane Helix	40	60	0.67
Non-Cytoplasmic	61	61	0.36
Transmembrane Helix	62	83	0.72
Cytoplasmic	84	112	0.88
Transmembrane Helix	113	132	0.94
Non-Cytoplasmic	133	146	0.74
Transmembrane Helix	147	167	0.84
Cytoplasmic	168	182	0.93
Transmembrane Helix	183	204	0.89
Non-Cytoplasmic	205	209	0.84
Transmembrane Helix	210	230	0.88
Cytoplasmic	231	265	0.62