YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBS_CLOTE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYIYNFLLM IQFLTRIPVK RSLPCEKEDF RRGAAMLPLI GLIVGCIQWV VFYILSKIFP  60
   61 ANITAIFIIL VGMVLIGGLH QDGLGDIFDG FFSFKGDKEK IIEIMKDSRV GTFAVLALIF 120
  121 DILIKYSALS FIIENNMSYA IIITPIMSRC TLVFLFLIGK NAKKNGTGNL FIENVSVKEF 180
  181 IISFIFMIVP SVLLIGYKYS VIIIVVSFII TLAFLNLCNR KIGGITGDCL GANNEIVEMF 240
  241 TMLVFVALLY IN

Type	Start	End	Confidence
Cytoplasmic	1	32	0.94
Transmembrane Helix	33	52	0.93
Non-Cytoplasmic	53	60	0.64
Transmembrane Helix	61	80	0.91
Cytoplasmic	81	109	0.87
Transmembrane Helix	110	129	0.93
Non-Cytoplasmic	130	138	0.75
Transmembrane Helix	139	159	0.95
Cytoplasmic	160	174	0.85
Transmembrane Helix	175	195	0.84
Non-Cytoplasmic	196	199	0.65
Transmembrane Helix	200	218	0.93
Cytoplasmic	219	229	0.82
Transmembrane Helix	230	251	0.71
Non-Cytoplasmic	252	252	0.77