YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBD_METJA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNPIILFLA IIFDRIIGEL PESIHPTVWI GKLIAFLENI FKSTNCKNKY RDFLFGSLTT  60
   61 FITLLVVGVI AFFVDKCIML LPFPLNYIIY GFLLSTTIGY KSLFEFCKKP IEYIKNGDLE 120
  121 GARKAVQHIV SRDASKLDKE HVLSAAVESL SENITDSIIG ALFYAIFFGL PGAFVYRAIN 180
  181 TLDAMIGYKN EKYLWYGKLA ARLDDIANFI PSRIAGILLI ITAPFYKGDV KKAIYGFLKE 240
  241 ANKVPSPNSG YTMATLANAL NITLEKIGYY KLGSGKIDVE KSLNAFKAVD YTVVVFLIIY 300
  301 TLIWWIT

Type	Start	End	Confidence
Cytoplasmic	1	52	0.90
Transmembrane Helix	53	74	0.93
Non-Cytoplasmic	75	82	0.74
Transmembrane Helix	83	104	0.72
Cytoplasmic	105	157	0.81
Transmembrane Helix	158	179	0.80
Non-Cytoplasmic	180	208	0.69
Transmembrane Helix	209	226	0.66
Cytoplasmic	227	285	0.82
Transmembrane Helix	286	306	0.83
Non-Cytoplasmic	307	307	0.84