YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CO3_CAVPO
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPAAGPSLL LLLLASVSLA LGDPMYSIIT PNILRLENEE TVVLEAHEVQ GDIPVTVTVH  60
   61 DFPAKKNVLS SEKTVLTSAT GYLGTVTIKI PASKEFKSDK GRKLVVVQAA FGGTQLEKVV 120
  121 LVSLQSGYLF IQTDKTIYTP GSTVLYRIFT VDSDLLPVGR TIIVTIETPD GIPIKRDTLS 180
  181 SNNQHGILPL SWNIPELVNM GQWKIQAFYE NSPKQVFSAE FEVKEYVLPS FEVLVEPTEK 240
  241 FYYIDDPKGL EVNIIARFLY GKNVDGTAFV IFGVQDGDQR ISLAQSLTRV VIEDGSGEVV 300
  301 LSRQVLLDGV QPSRPEALVG KSLYVSVTVI LHSGSDMVEA ERSGIPIVTS PYQIHFTKTP 360
  361 KYFKPAMPFE IMVLVTNPDG SPAPHVPVVT QGSNVQSLTQ ADGVARLSIN TPNTRQPLSV 420
  421 TVQTKKGGIP DARQAINTMQ ALPYTTMYNS NNYLHLSMPR TELKPGETIN VNFHLRSDPN 480
  481 QEAKIRYYTY LIMNKGKLLK VGRQPREPGQ ALVVLPMPIT KELIPSFRLV AYYTLIGASA 540
  541 QREVVADSVW ADVRDSCVGT LVVKGGSGKD GQDKRQQHLP RQQMTLRIEG NQGARVGLVA 600
  601 VDKGVFVLNK KHKLTQSKIW DVVEKADIGC TPGSGKDYAG VFTDAGLSFK SSKAGLQTAQ 660
  661 REGLDCPKPA ARRRRSVQLM ERRMDKAGKY KSKELRRCCE DGMRENPMQF SCQRRARYVS 720
  721 LGEACVKAFL DCCTYMAQLR QQHRREQNLG LARSDMDEDI IPEEDIISRS QFPESWLWTI 780
  781 EELKEPERNG ISTKTMNIFL KDSITTWEIL AVSLSDKKGI CVADPFEVTV MQDFFIDLRL 840
  841 PYSVVRNEQV EIRAVLYNYR EAQSLKVRVE LLHNPAFCSL ATAKKRHTQT VTIGPKSSVA 900
  901 VPYVLVPLKI GLQEVEVKAA VYNYFISDGV KKTLKVVPEG MRVNKTVAIR TLNPEQLGQG 960
  961 GVQREEIPAA DLSDQVPDTD SETKILLQGT PVAQMAEDAV DAERLKHLII TPSGCGEQNM1020
 1021 IGMTPTVIAV HYLDQTEQWE KFGLEKRQEA LNLINRGYTQ QLAFKQPNWA YAAFKNRASS1080
 1081 TWLTAYVVKV FSLAANLIGI DSEVLCGAVK WLILEKQKPD GVFQEDGPVI HQEMIGGVRT1140
 1141 AQEADVSLTA FVLIALQEAK DICRAQVNNL EANINKAGDY IESRYADVRR PYTLAIAGYA1200
 1201 LALLERLNGA TLQKFLNAAT EKNRWEEARQ KLYSVEATSY ALLALLLLKD FDAVPPVVRW1260
 1261 LNEQRYYGRG YGSTQATFMV FQALAQYQTD VPDHKDLNME VALQLPSRSS PSKFRLVWEA1320
 1321 GSLLRSEATK QNEGFKLTAK GKGQGTLSVV AVYYAKTKRK VVCKNFDLRV TLKPAPDTVK1380
 1381 KPQEAKSTMI LGICTRYLGD QDATMSILDI SMMTGFIPDT DDLKLLATGV DRYISKYEMN1440
 1441 KDFSKNTLII YLDKVSHSEE ECLSFKIHQF FNVGLIQPGS VKVYSYYNLD ETCTQFYHPE1500
 1501 KEDGMLNKLC HKDLCRCAEE NCFIQLPEKI TLDERLEKAC EPGVDYVYKT KLLKMELSDD1560
 1561 FDEYIMTIEQ VIKSGSDEVQ AGKERRFISH IKCRDALHLK EGKHYLMWGL SSDLWGERPN1620
 1621 MSYIIGKDTW VEAWPEAEEC QDEENQQQCQ DLGTFTENMV VFGCPN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle