YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CML1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYEGYNDSS IYGEEYSDGS DYIVDLEEAG PLEAKVAEVF LVVIYSLVCF LGILGNGLVI  60
   61 VIATFKMKKT VNTVWFVNLA VADFLFNIFL PIHITYAAMD YHWVFGKAMC KISSFLLSHN 120
  121 MYTSVFLLTV ISFDRCISVL LPVWSQNHRS VRLAYMTCVV VWVWLSSESP PSLVFGHVST 180
  181 SHGKITCFNN FSLAAPEPFS HSTHPRTDPV GYSRHVAVTV TRFLCGFLIP VFIITACYLT 240
  241 IVFKLQRNRQ AKTKKPFKII ITIIITFFLC WCPYHTLYLL ELHHTAVPAS VFSLGLPLAT 300
  301 AVAIANSCMN PILYVFMGHD FKKFKVALFS RLVNALSEDT GPSSYPSHRS FTKMSSLIEK 360
  361 ASVNEKETST L

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.96
Transmembrane Helix	41	63	0.93
Cytoplasmic	64	73	0.82
Transmembrane Helix	74	95	0.94
Non-Cytoplasmic	96	121	0.82
Transmembrane Helix	122	144	0.78
Cytoplasmic	145	150	0.86
Transmembrane Helix	151	167	0.89
Non-Cytoplasmic	168	219	0.91
Transmembrane Helix	220	242	0.91
Cytoplasmic	243	256	0.91
Transmembrane Helix	257	278	0.91
Non-Cytoplasmic	279	293	0.78
Transmembrane Helix	294	316	0.84
Cytoplasmic	317	371	0.98