YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLS_OCEIH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGITSLLLGL TFVLNIALAI SIIFLERKDP TSSWAWVMVL LFIPILGFFL YLIFGKPISN  60
   61 RKIFSWDKKS RLGVKTTVQS QLRLLEENQF EFNQPDLIEH KDLVYLHLKN DEAIYTQNNG 120
  121 VDIFTDGQTK FDALLEDIEK AKKHIHIQYY IMRSDGLGNR LADMLIKKVN EGVEVRVLYD 180
  181 DMGSRSLKNS YIKRLKRAGV MVEAFFPSRF IVNFKINYRN HRKLAIIDGY IGYLGGFNVG 240
  241 DEYLGINKKF GYWRDTHLRV IGDAVQSMQT RFILDWNQAS RDTILYNEDY YQTVSAGNVG 300
  301 MQIVTSGPDS EYEQIKNGYI KMIMEANDYI CIQTPYFIPD ESLRDALKIA VLSGVHVKIM 360
  361 IPNKPDHPFV YWATLSYCGD LIQAGAEIFI YQNGFLHAKT IIVDGRIASV GTANIDVRSF 420
  421 RLNFEVNGFL YDSEVVNRLQ NEFDADLEKS TQMTRKLYDQ RSIGIRFKES ISRLISPVL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.73
Transmembrane Helix	6	25	0.95
Cytoplasmic	26	33	0.72
Transmembrane Helix	34	55	0.95
Non-Cytoplasmic	56	479	0.81