YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLS_LISIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLAYLLVI LLILNVFFAA VTVFLERRDT SATWAWLLVL TFVPIFGFII YLIFGRKLSG  60
   61 KKIFDWKGQE KIGIQESTAN QIEMIRQKEF PFSDPNVKKH RDLIYLLLVN DGAILTQDNE 120
  121 VELFIDGHEK FDALIADIEK AKDHIHLIYY IFHSDELGNR LMRVLERKAA EGLNVKIIYD 180
  181 AMGSRTTKKS FFRTFEKNGG LVRPFFPSKL PLINFRLNYR NHRKLAIIDG DVGYIGGFNI 240
  241 GDEYLGRSKK FGYWRDTHLR VHGKAVYAMQ TRFIMDWNSA SSTHKIDYKA RYFPTFHGKG 300
  301 HTSMQIVSSG PDSEWQQIKN GYIKMINAAK KTIYLQSPYF IPDASLLEAI KIAALSGVDV 360
  361 RVMIPNKPDH AFVYRATTNY AGELMETGAK IFIYDNGFIH AKTLVVDGEI ASVGTANMDF 420
  421 RSFRLNFEVN AFIYEKKMVQ KLEDAFLEDI LKSYQLTPEL YAKRSLWIKF KEAVSRLLSP 480
  481 IL

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.69
Transmembrane Helix	5	25	0.94
Cytoplasmic	26	32	0.69
Transmembrane Helix	33	55	0.93
Non-Cytoplasmic	56	482	0.75