YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2952028
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNRLNVLAF FALLFAALYI SRGFLQSWMV GTLSVVFTLS VIFIGIIIFF ENRHPTKTLT  60
   61 WLLVLAAFPV VGFFFYLMFG QNHRKSKRFS KKAIEDERAF QKIEGQRQLN EEQLKKMGGH 120
  121 QQLLFRLAHK LGKNPISFSS ETKVLTDGKE TYAHILQALK MAEHHIHLEY YIVRHDDLGN 180
  181 QIKDILISKA KEGVHVRFLY DGVGSWKLSK SYVEELRDAG VEMVSFSPVK LPFLTHTINY 240
  241 RNHRKIIVID GVVGFVGGLN IGDEYLGKDA YFGYWRDTHL YVRGEAVRTL QLIFLQDWHY 300
  301 QTGETILNQT YLSPSLSMTK GDGGVQMIAS GPDTRWEVNK KLFFSMITSA KKSIWIASPY 360
  361 FIPDDDILSA LKIAALSGID VRILVPNRPD KRIVFHASRS YFPELLEAGV KVYEYNRGFM 420
  421 HSKIIIVDHE IASIGTSNMD MRSFHLNFEV NAYLYRTSSV TKLVSDYVYD LEHSNQINFS 480
  481 LFKNRPFFHR LIESTSRLLS PLL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	25	0.90
Non-Cytoplasmic	26	29	0.77
Transmembrane Helix	30	50	0.94
Cytoplasmic	51	58	0.89
Transmembrane Helix	59	80	0.95
Non-Cytoplasmic	81	503	0.99