YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30255156, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTLKLIFF VLLLFALFVS LRMFIDVAFY SDVIGIKDVS ILGIISILFT VSAFLIGCVI  60
   61 FLENRHPSKT LTWLIVLGIF PVFGFFAYLL FGQNFRRKRM FQKKALLDEQ AFLQYKGHED 120
  121 YEERILRNHK HQELLFRLAD RLGALNISFQ TETRTLTNGD ETFQAILDGL KRAKHHIHME 180
  181 YYIVRDDKLG TEIKDILIQK SKEGVVVRFL YDAVGSFKLS KSYIEELNDA GVEMIPFFPV 240
  241 RFPILNDKIN YRNHRKIVII DGNEGFVGGL NIGDEYLGKD KYFGFWRDTH LYLRGEAVQS 300
  301 LQLIFLQDWF YMTGEAVLAP EYLQAKAVEG EHWGGVQLVA GGPDNKWETI KHLYFAMIAS 360
  361 ARKSIWIATP YFIPDDDILS ALKVAALAGI DVRLLMPSKP DKRTVFYASR SYFPELLDAG 420
  421 VKIYEYEKGF LHSKVVIVDS DLASIGTANM DMRSFHLNFE VNAFLYDTDS IRKLVQDFKD 480
  481 DLEESSEIHV DRFHKRRLHR RIVESTYRLL SPLL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.95
Transmembrane Helix	7	29	0.88
Non-Cytoplasmic	30	40	0.84
Transmembrane Helix	41	62	0.95
Cytoplasmic	63	70	0.91
Transmembrane Helix	71	92	0.95
Non-Cytoplasmic	93	514	0.99