YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLS1_BACCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPIVQLLL IFTIVSIVLF LLNTSYISLY TFVGALWSIT IVGISFVIFI ENRSPQSTLA  60
   61 WFLVLALLPI IGVLLYAIFG RSRWRRKKHL HRSEEQRKLF REILEGRRLE LLLTVPLNER 120
  121 SIHLTEVIQK FGGGPAADRT TTKLLTNGDQ TFSEILRAIE QAKHHIHIQY YIYKSDEIGT 180
  181 KVRDALIQKA KDGVIVRFLY DGLGSNTLRR RFLQPMKEAG IEIVEFDPIF SAWLLETVNY 240
  241 RNHRKIVIVD GEIGFTGGLN VGDEYLGRSK KFPVWRDSHL KIEGKALYKL QAIFLEDWLY 300
  301 ASSGLNTYSW DQFMNRQYFP GKEISNAEGA VQIVASGPSS DDKSIRNTLL AVMGSAKKSI 360
  361 WIATPYFIPD QETLTLLRLS AIAGIDVRIL YPGKSDSIIS DQASQSYFTP LLKAGASIYS 420
  421 YKDGFMHAKI VLVDDTIATI GTANMDVRSF ELNYEIISVL YESKTVHDIK RDFEEDFKHS 480
  481 TEIKWNSFQK RSIKKRILES FMRLISPLL

Type	Start	End	Confidence
Cytoplasmic	1	7	0.73
Transmembrane Helix	8	27	0.88
Non-Cytoplasmic	28	30	0.59
Transmembrane Helix	31	50	0.89
Cytoplasmic	51	58	0.76
Transmembrane Helix	59	80	0.95
Non-Cytoplasmic	81	509	0.87