YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260779, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPIIQLLL IFTIVSIVPF LLNTSYISLY TFVGVLWSIT IVGISFVIFI ENRSPQSTLA  60
   61 WFLVLALLPV VGVLLYSIFG RSRWRRKKHL HRSEEQRKLF REILEGRRLE LSLKVPLSER 120
  121 SVHLTEVVQK FGGGPAADRT TTKLLTNGDQ TFSEILQAIE QAKHHIHIQY YIYKSDEIGT 180
  181 KVRDALIKKA KDGVIVRFLY DGLGSNTLRR RFLQPMKEAG IEIVEFDPIF SAWLLETVNY 240
  241 RNHRKIVIVD GEIGFTGGLN VGDEYLGRSK KFPVWRDSHL KVEGKALYKL QAIFLEDWLY 300
  301 ASSGLNTYSW DPFMNRQYFP GKEISNAEGA VQIVASGPSS DDKSIRNTLL AVMGSAKKSI 360
  361 WIATPYFIPD QETLTLLRLS AISGIDVRIL YPGKSDSIIS DQASQSYFTP LLKAGASIYS 420
  421 YKDGFMHAKI LLVDDKIATI GTANMDVRSF ELNYEIISVL YESETVHDIK RDFEDDFKHS 480
  481 TEIKWNAFQK RSIKKRILES FMRLISPLL

Type	Start	End	Confidence
Cytoplasmic	1	4	0.89
Transmembrane Helix	5	23	0.87
Non-Cytoplasmic	24	28	0.51
Transmembrane Helix	29	50	0.87
Cytoplasmic	51	58	0.74
Transmembrane Helix	59	80	0.94
Non-Cytoplasmic	81	509	0.85