YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156120301
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVLSICLC FLLRALSASS ADGPPEPRDV HFYSESLRNV VRWTAGHGSP SDTVYTVEYA  60
   61 IYGDADEKIP EQVRWRPVDQ CISVSQTECD VSQETFDLRD EYFARVRATS KHGQSVWSES 120
  121 IGRFRPLSDT VLGAPLVDVT VRQNHIDITL KGPFRWRMKR MKKEKSLWKI IPNMIYKVSV 180
  181 FNSRSNRTDV FRLTNGSLSL GELEFSTQFC VVAQAQSESI PLSYIPSQKQ CVHTPKDPFR 240
  241 DQLLAAMLGG VLPSALCLCV MAVLGALIRC YITDHRQKLP KSTQLVQLSE KLQTFKPEVP 300
  301 QTVIFNIKLD DSSVLRPALP LPFSVEDSSE EPVNAVPQPA GSYAQQQPLP PAGPASLSGD 360
  361 LQDGDSLSLD SEPLADHHSE AGDYAFVIRA KVDHSEVEVS QYRTQGHTAD PQDHHIEEEA 420
  421 QIFVDWSPES GELKIPLMGL LGLEDESGVQ TEAVSLLPNL ILTQTSVDGC EQEDDFSMME 480
  481 RNWGLVIHSS PE

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	244	0.99
Transmembrane Helix	245	268	0.77
Cytoplasmic	269	492	0.83