YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLN3_CANLF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.87
Transmembrane Helix	38	59	0.82
Non-Cytoplasmic	60	94	0.85
Transmembrane Helix	95	115	0.73
Cytoplasmic	116	127	0.52
Transmembrane Helix	128	148	0.84
Non-Cytoplasmic	149	151	0.47
Transmembrane Helix	152	175	0.71
Cytoplasmic	176	179	0.48
Transmembrane Helix	180	203	0.88
Non-Cytoplasmic	204	210	0.44
Transmembrane Helix	211	231	0.93
Cytoplasmic	232	279	0.51
Transmembrane Helix	280	298	0.86
Non-Cytoplasmic	299	318	0.42
Transmembrane Helix	319	333	0.37
Cytoplasmic	334	343	0.70
Transmembrane Helix	344	365	0.87
Non-Cytoplasmic	366	370	0.73
Transmembrane Helix	371	393	0.88
Cytoplasmic	394	406	0.85
Transmembrane Helix	407	430	0.85
Non-Cytoplasmic	431	438	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGCAGSRRR LLDSEEEETA PEPRPPRSYH KGALWKNVMG FWLLGLCNNF SYVVMLSAAH  60
   61 DILSHQRASG NQSHVDPDPP PTAHNSSSRF DCNSVSTAAV LLADILPTLI IKLLAPLGLH 120
  121 LLPYSPRVLV SGICAAGSFI LVAFSHSVGT SLCGVVLASI SSGVGEVTFL SLTAFYPRAV 180
  181 ISWWSSGTGG AGLMGALSYL GLTQAGLSPQ HTLLSMLGIP ALMLASYFFL LTSPEPQDPG 240
  241 GEEEAETSAR QPLIDSETPE SKPDSSSNLS LQERWTVFKG LLWYIVPLVL VYFAEYFINQ 300
  301 GLFELLFFRN TSLNHAQQYR WYQMLYQAGV FVSRSSLHCC RIRFTWVLAL LQCLNLAFLL 360
  361 VDVWFSFLPS IYLVFLIILY EGLLGGAAYV NTFHNIALET SDQHREFAMA AACISDTLGI 420
  421 SLSGLLALPL HDFLCHLS