YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLDY_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVGLQLLA TVLAIIGWLG EIVICALPMW KVTAFIGNNI VTAQIFWEGL WMNCVQQSTG  60
   61 QMQCKVYDSM LALPQDLQAA RALVVISIIV TFMGVFLTIA GGKCTNCIED QDAKAKVVVA 120
  121 AGVFFLVGGI LCLIPVCWSA NSVIKDFYNP TLSDAQKREL GASLFIGWCA SGLLLLGGAL 180
  181 LCCQCPKNEG RAYSVKYSAP RSAPGAYV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.79
Transmembrane Helix	8	30	0.88
Non-Cytoplasmic	31	78	0.88
Transmembrane Helix	79	101	0.92
Cytoplasmic	102	116	0.88
Transmembrane Helix	117	139	0.92
Non-Cytoplasmic	140	160	0.90
Transmembrane Helix	161	183	0.90
Cytoplasmic	184	208	0.94