YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLD7B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKGLQLLG FTLSLLGLIG LIIGTIMPQW KMSAYVGDNI ITAIAMYQGL WMSCAYQSTG  60
   61 QQQCKVYDSV LQLDSALQAT RALMVVAILL TVAGLGVASM GMKCTNCGGD DKVKKSRIAM 120
  121 TGGIILSVGA LCSIVACGWF TSQIIRDFYN PFTPVNTKYE FGAAIFIAWA GAFLDIMGGG 180
  181 MLASSCSKGQ SSPNYPKSSR PVKSSRPPSS SKEYV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.75
Transmembrane Helix	8	27	0.95
Non-Cytoplasmic	28	78	0.86
Transmembrane Helix	79	102	0.86
Cytoplasmic	103	117	0.92
Transmembrane Helix	118	142	0.88
Non-Cytoplasmic	143	160	0.92
Transmembrane Helix	161	183	0.88
Cytoplasmic	184	215	0.95