YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.73
Transmembrane Helix	6	27	0.87
Non-Cytoplasmic	28	53	0.72
Transmembrane Helix	54	71	0.91
Cytoplasmic	72	143	0.52
Transmembrane Helix	144	165	0.86
Non-Cytoplasmic	166	176	0.52
Transmembrane Helix	177	200	0.87
Cytoplasmic	201	220	0.65
Transmembrane Helix	221	242	0.92
Non-Cytoplasmic	243	257	0.62
Transmembrane Helix	258	279	0.90
Cytoplasmic	280	287	0.56
Transmembrane Helix	288	312	0.83
Non-Cytoplasmic	313	319	0.53
Transmembrane Helix	320	340	0.90
Cytoplasmic	341	349	0.61
Transmembrane Helix	350	372	0.88
Non-Cytoplasmic	373	383	0.64
Transmembrane Helix	384	405	0.87
Cytoplasmic	406	418	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHRLLIATV VGILAAFAVA GFRHAMLLLE WLFLNNDSGS LVNAATNLSP WRRLLTPALG  60
   61 GLAAGLLLMG WQKFTQQRPH APTDYMEALQ TDGQFDYAAS LVKSLASLLV VTSGSAIGRE 120
  121 GAMILLAALA ASCFAQRFTP RQEWKLWIAC GAAAGMAAAY RAPLAGSLFI AEVLFGTMML 180
  181 ASLGPVIISA VVALLVSNLI NHSDALLYNV QLSVTVQARD YALIISTGVL AGLCGPLLLT 240
  241 LMNACHRGFV SLKLAPPWQL ALGGLIVGLL SLFTPAVWGN GYSTVQSFLT APPLLMIIAG 300
  301 IFLCKLCAVL ASSGSGAPGG VFTPTLFIGL AIGMLYGRSL GLWFPDGEEI TLLLGLTGMA 360
  361 TLLAATTHAP IMSTLMICEM TGEYQLLPGL LIACVIASVI SRTLHRDSIY RQHTAQHS