YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCN3_CAVPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.98
Transmembrane Helix	67	88	0.92
Non-Cytoplasmic	89	154	0.95
Transmembrane Helix	155	176	0.91
Cytoplasmic	177	197	0.85
Transmembrane Helix	198	219	0.85
Non-Cytoplasmic	220	254	0.58
Transmembrane Helix	255	279	0.81
Cytoplasmic	280	289	0.56
Transmembrane Helix	290	308	0.60
Non-Cytoplasmic	309	328	0.87
Transmembrane Helix	329	349	0.91
Cytoplasmic	350	364	0.83
Transmembrane Helix	365	385	0.89
Non-Cytoplasmic	386	439	0.93
Transmembrane Helix	440	460	0.91
Cytoplasmic	461	467	0.74
Transmembrane Helix	468	490	0.85
Non-Cytoplasmic	491	514	0.80
Transmembrane Helix	515	540	0.64
Cytoplasmic	541	760	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNGGSINSS THLLDLLDEP IPGVGTYDDF HTIDWVREKC KDRERHRRIN SKKKESAWEM  60
   61 TKSLYDAWSG WLVVTLTGLA SGALAGLIDI AADWMTDLKE GICLSALWYN HEQCCWGSNE 120
  121 TTFEERDKCP QWKTWAELII GQAEGPGSYI MNYIMYIFWA LSFAFLAVSL VKVFAPYACG 180
  181 SGIPEIKTIL SGFIIRGYLG KWTLMIKTIT LVLAVASGLS LGKEGPLVHV ACCCGNIFSY 240
  241 LFPKYSTNEA KKREVLSAAS AAGVSVAFGA PIGGVLFSLE EVSYYFPLKT LWRSFFAALV 300
  301 AAFVLRSINP FGNSRLVLFY VEYHTPWYLF ELFPFILLGV FGGLWGAFFI RANIAWCRRR 360
  361 KSTKFGKYPV LEVIIVAAIT AVIAFPNPYT RLNTSELIKE LFTDCGPLES SSLCDYRNDM 420
  421 NASKIVDDIP DRPAGVGVYS AIWQLCLALI FKIIMTVFTF GIKVPSGLFI PSMAIGAIAG 480
  481 RIVGIAVEQL AYFHHDWFIF KEWCEVGADC ITPGLYAMVG AAACLGGVTR MTVSLVVIVF 540
  541 ELTGGLEYIV PLMAAVMTSK WVGDAFGREG IYEAHIRLNG YPFLDAKEEF THTTLAADVM 600
  601 RPRRNDPPLA VLTQDNMTVD DIENMINETS YNGFPVIMSK ESQRLVGFAL RRDLTIAIES 660
  661 ARKKQEGIVG SSRVCFAQHT PSLPAESPRP LKLRSILDMS PFTVTDHTPM EIVVDIFRKL 720
  721 GLRQCLVTHN GRLLGIITKK DILRHMAQTA NQDPASIMFN