YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194550914, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKKAQLII EGSAPVELPV LSGTMGPDVV DVRGLTATGH FTFDPGFMST ASCESKITYI  60
   61 DGDKGVLLHR GYPIEQLAEK SDYLETCYLL LNGELPTAAQ KEQFVGTIKN HTMVHEQLKT 120
  121 FFNGFRRDAH PMAVMCGVIG ALSAFYHDSL DINNPKHREV SAHRLIAKMP TIAAMVYKYS 180
  181 KGEPMMYPRN DLNYAENFLH MMFNTPCETK PISPVLAKAM DRIFILHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIASGIAAL WGPAHGGANE AVLRMLDEIG DVSNIDKFVE KAKDKNDPFK 300
  301 LMGFGHRVYK NFDPRAKVMK QTCDEVLQEL GINDPQLELA MKLEEIARHD PYFVERNLYP 360
  361 NVDFYSGIIL KAIGIPTSMF TVIFALARTV GWISHWQEML SGPYKIGRPR QLYTGHTQRD 420
  421 FTALKDRG

Type	Start	End	Confidence
Non-Cytoplasmic	1	367	0.60
Transmembrane Helix	368	392	0.67
Cytoplasmic	393	428	0.62