YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CISY_COXBU
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRKAKLSF ENQSVEFPIY SPTLGKDVID VKTLGNHGAY ALDVGFYSTA ACESKITFID  60
   61 GEKGILLYRG YPIDQLADKS DYMEVCYLLM YGELPNKGEK EKFVRTIKEH TSVYEQVTKF 120
  121 FNGFHYDAHP MAMVLSTIGA LSAFYHDALD ITKPADRELS AIRLIAKMPT LAAMSYKYSI 180
  181 GQPFMHPRRA MNYAENFLHM LFGTPYEETE PDPVLARAMD RIFILHADHE QNASTTTVRV 240
  241 AGSTGANPFA CISAGISALW GPAHGGANEA CLNMLRKIGD EKNIGQYIKK AKDKNDPFRL 300
  301 MGFGHRVYKN YDPRAKVMQK TCYEVLDAVG RHNEPLFKLA IKLEKIALED DYFIEKKLYP 360
  361 NVDFYSGLTL NAIGIPSNMF TVIFALSRTV GWISHWMEMM SSPDHRLARP RQLYTGETER 420
  421 EVISLDKRQA

Type	Start	End	Confidence
Non-Cytoplasmic	1	371	0.83
Transmembrane Helix	372	392	0.54
Cytoplasmic	393	430	0.52