YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CISY_BRAJA
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAKASNKTA TLTVGNKNYD LPIHSGSVGP DVIDIGKLYG QSGLFTYDPG FTSTASCQSK  60
   61 ITYIDGDAGV LEYRGYPIEQ LAENGDFLET CYLLLYGNLP TAAQKKDFDD RVIHHTMVHE 120
  121 QMARFFQGFR RDAHPMAVMV ASVGALAAFY HDSTDINDPK QRMIASMRMI AKIPTLAAMA 180
  181 YKYTIGQPFV YPKNSLKFAE NFLHMCFAVP CEEYKINPVL ADALDKIFIL HADHEQNAST 240
  241 STVRIAGSSG ANPFACIAAG IACLWGPAHG GANEAALAML AEIGSVDKIP EFIAKVKDKN 300
  301 SEVRLMGFGH RVYKNYDPRA KIMQKMCHAV LKETGHGDDP MLKVAMELEK IALSDQYFID 360
  361 RKLYPNVDFY SGITLKAMGF PVSMFTVLFA VARTVGWISQ WSEMIEDPQQ KIGRPRQLYT 420
  421 GVTRRDYVAI KDRK

Type	Start	End	Confidence
Cytoplasmic	1	132	0.56
Transmembrane Helix	133	151	0.41
Non-Cytoplasmic	152	376	0.63
Transmembrane Helix	377	397	0.63
Cytoplasmic	398	434	0.54