YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CISY_BARHE
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNKAHITV NDKKIELSVR KGTLGPDVIE IASLYKETDT FTYDPGFTST ASCESKITYI  60
   61 DGNEGILLYR GYPIDQLAEK GDFLESCYLL LYGELPTKQE KIDFDRCIMQ HTMVHEQFAR 120
  121 FFHGFRRDSH PMAVMIACLG AMSAFYHDSI DITDPQQRMI ASIRLISKVP TLAAMAYKYS 180
  181 IGQAFVYPRN DLSYAANFLR MCFSVPCEEY KINPVLTRAM DRIFTLHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIAAGVACL WGPAHGGANE ACLKMLQEIG SVERIPEFIA RAKDKNDSFR 300
  301 LMGFGHRVYK NYDPRAKIMQ QTCHEVLKEL NIQNDPLLDI AITLENIALN DEYFIEKKLY 360
  361 PNVDFYSGIT LKALGFPTEM FTVLFALARS VGWVAQWKEM IEDPAQKISR PRQLYTGYAA 420
  421 REYIPIDKRV N

Type	Start	End	Confidence
Cytoplasmic	1	128	0.52
Transmembrane Helix	129	147	0.48
Non-Cytoplasmic	148	431	0.90