YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCN5A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	127	0.96
Transmembrane Helix	128	150	0.91
Non-Cytoplasmic	151	195	0.70
Transmembrane Helix	196	216	0.58
Cytoplasmic	217	226	0.76
Transmembrane Helix	227	246	0.80
Non-Cytoplasmic	247	253	0.70
Transmembrane Helix	254	275	0.92
Cytoplasmic	276	391	0.86
Transmembrane Helix	392	415	0.92
Non-Cytoplasmic	416	718	0.87
Transmembrane Helix	719	737	0.84
Cytoplasmic	738	749	0.71
Transmembrane Helix	750	772	0.76
Non-Cytoplasmic	773	783	0.83
Transmembrane Helix	784	805	0.84
Cytoplasmic	806	831	0.78
Transmembrane Helix	832	859	0.79
Non-Cytoplasmic	860	881	0.73
Transmembrane Helix	882	900	0.85
Cytoplasmic	901	916	0.61
Transmembrane Helix	917	941	0.89
Non-Cytoplasmic	942	1207	0.79
Transmembrane Helix	1208	1231	0.80
Cytoplasmic	1232	1246	0.71
Transmembrane Helix	1247	1263	0.74
Non-Cytoplasmic	1264	1277	0.71
Transmembrane Helix	1278	1301	0.79
Cytoplasmic	1302	1323	0.81
Transmembrane Helix	1324	1350	0.88
Non-Cytoplasmic	1351	1447	0.70
Transmembrane Helix	1448	1472	0.88
Cytoplasmic	1473	1564	0.64
Transmembrane Helix	1565	1584	0.87
Non-Cytoplasmic	1585	1594	0.70
Transmembrane Helix	1595	1619	0.83
Cytoplasmic	1620	1638	0.80
Transmembrane Helix	1639	1660	0.68
Non-Cytoplasmic	1661	1661	0.46
Transmembrane Helix	1662	1684	0.77
Cytoplasmic	1685	1695	0.56
Transmembrane Helix	1696	1719	0.65
Non-Cytoplasmic	1720	1747	0.58
Transmembrane Helix	1748	1773	0.84
Cytoplasmic	1774	2019	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLLLPRGT SSFRRFTRES LAAIEKRMAE KQARGGSATS QESREGLQEE EAPRPQLDLQ  60
   61 ASKKLPDLYG NPPRELIGEP LEDLDPFYST QKTFIVLNKG KTIFRFSATN ALYVLSPFHP 120
  121 VRRAAVKILV HSLFSMLIMC TILTNCVFMA QHDPPPWTKY VEYTFTAIYT FESLVKILAR 180
  181 GFCLHAFTFL RDPWNWLDFS VIVMAYTTEF VDLGNVSALR TFRVLRALKT ISVISGLKTI 240
  241 VGALIQSVKK LADVMVLTVF CLSVFALIGL QLFMGNLRHK CVRNFTELNG TNGSVEADGL 300
  301 VWNSLDVYLN DPANYLLKNG TTDVLLCGNS SDAGTCPEGY RCLKAGENPD HGYTSFDSFA 360
  361 WAFLALFRLM TQDCWERLYQ QTLRSAGKIY MIFFMLVIFL GSFYLVNLIL AVVAMAYEEQ 420
  421 NQATIAETEE KEKRFQEAME MLKKEHEALT IRGVDTVSRS SLEMSPLAPV TNHERKSKRR 480
  481 KRLSSGTEDG GDDRLPKSDS EDGPRALNQL SLTHGLSRTS MRPRSSRGSI FTFRRRDQGS 540
  541 EADFADDENS TAGESESHRT SLLVPWPLRH PSAQGQPGPG ASAPGYVLNG KRNSTVDCNG 600
  601 VVSLLGAGDA EATSPGSYLL RPMVLDRPPD TTTPSEEPGG PQMLTPQAPC ADGFEEPGAR 660
  661 QRALSAVSVL TSALEELEES HRKCPPCWNR FAQHYLIWEC CPLWMSIKQK VKFVVMDPFA 720
  721 DLTITMCIVL NTLFMALEHY NMTAEFEEML QVGNLVFTGI FTAEMTFKII ALDPYYYFQQ 780
  781 GWNIFDSIIV ILSLMELGLS RMGNLSVLRS FRLLRVFKLA KSWPTLNTLI KIIGNSVGAL 840
  841 GNLTLVLAII VFIFAVVGMQ LFGKNYSELR HRISDSGLLP RWHMMDFFHA FLIIFRILCG 900
  901 EWIETMWDCM EVSGQSLCLL VFLLVMVIGN LVVLNLFLAL LLSSFSADNL TAPDEDGEMN 960
  961 NLQLALARIQ RGLRFVKRTT WDFCCGILRR RPKKPAALAT HSQLPSCITA PRSPPPPEVE1020
 1021 KVPPARKETR FEEDKRPGQG TPGDSEPVCV PIAVAESDTE DQEEDEENSL GTEEESSKQE1080
 1081 SQVVSGGHEP YQEPRAWSQV SETTSSEAGA STSQADWQQE QKTEPQAPGC GETPEDSYSE1140
 1141 GSTADMTNTA DLLEQIPDLG EDVKDPEDCF TEGCVRRCPC CMVDTTQSPG KVWWRLRKTC1200
 1201 YRIVEHSWFE TFIIFMILLS SGALAFEDIY LEERKTIKVL LEYADKMFTY VFVLEMLLKW1260
 1261 VAYGFKKYFT NAWCWLDFLI VDVSLVSLVA NTLGFAEMGP IKSLRTLRAL RPLRALSRFE1320
 1321 GMRVVVNALV GAIPSIMNVL LVCLIFWLIF SIMGVNLFAG KFGRCINQTE GDLPLNYTIV1380
 1381 NNKSECESFN VTGELYWTKV KVNFDNVGAG YLALLQVATF KGWMDIMYAA VDSRGYEEQP1440
 1441 QWEDNLYMYI YFVVFIIFGS FFTLNLFIGV IIDNFNQQKK KLGGQDIFMT EEQKKYYNAM1500
 1501 KKLGSKKPQK PIPRPLNKYQ GFIFDIVTKQ AFDVTIMFLI CLNMVTMMVE TDDQSPEKVN1560
 1561 ILAKINLLFV AIFTGECIVK MAALRHYYFT NSWNIFDFVV VILSIVGTVL SDIIQKYFFS1620
 1621 PTLFRVIRLA RIGRILRLIR GAKGIRTLLF ALMMSLPALF NIGLLLFLVM FIYSIFGMAN1680
 1681 FAYVKWEAGI DDMFNFQTFA NSMLCLFQIT TSAGWDGLLS PILNTGPPYC DPNLPNSNGS1740
 1741 RGNCGSPAVG ILFFTTYIII SFLIVVNMYI AIILENFSVA TEESTEPLSE DDFDMFYEIW1800
 1801 EKFDPEATQF IEYLALSDFA DALSEPLRIA KPNQISLINM DLPMVSGDRI HCMDILFAFT1860
 1861 KRVLGESGEM DALKIQMEEK FMAANPSKIS YEPITTTLRR KHEEVSATVI QRAFRRHLLQ1920
 1921 RSVKHASFLF RQQAGGSGLS DEDAPEREGL IAYMMNGNFS RRSAPLSSSS ISSTSFPPSY1980
 1981 DSVTRATSDN LPVRASDYSR SEDLADFPPS PDRDRESIV