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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|103309, gi|15...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGGRRGLVA PQNTFLENII RRSNSQPDSS FLLANAQIVD FPIVYCNESF CKISGYNRAE  60
   61 VMQKSCRYVC GFMYGELTDK ETVGRLEYTL ENQQQDQFEI LLYKKNNLQC GCALSQFGKA 120
  121 QTQETPLWLL LQVAPIRNER DLVVLFLLTF RDITALKQPI DSEDTKGVLG LSKFAKLARS 180
  181 VTRSRQFSAH LPTLKDPTKQ SNLAHMMSLS ADIMPQYRQE APKTPPHILL HYCAFKAIWD 240
  241 WVILCLTFYT AIMVPYNVAF KNKTSEDVSL LVVDSIVDVI FFIDIVLNFH TTFVGPGGEV 300
  301 VSDPKVIRMN YLKSWFIIDL LSCLPYDVFN AFDRDEDGIG SLFSALKVVR LLRLGRVVRK 360
  361 LDRYLEYGAA MLILLLCFYM LVAHWLACIW YSIGRSDADN GIQYSWLWKL ANVTQSPYSY 420
  421 IWSNDTGPEL VNGPSRKSMY VTALYFTMTC MTSVGFGNVA AETDNEKVFT ICMMIIAALL 480
  481 YATIFGHVTT IIQQMTSATA KYHDMLNNVR EFMKLHEVPK ALSERVMDYV VSTWAMTKGL 540
  541 DTEKVLNCCP KDMKADICVH LNRKVFDEHP TFRLASDGCL RALAMHFMMS HSAPGDLLYH 600
  601 TGESIDSLCF IVTGSLEVIQ DDEVVAILGK GDVFGDQFWK DSAVGQSAAN VRALTYCDLH 660
  661 AIKRDKLLEV LDFYSAFANS FARNLVLTYN LRHRLIFRRV ADVKREKELA ERRKNEPQLP 720
  721 QNQDHLVRKI FSKFRRTPQV QAGSKELVGG SGQSDVEKGD GEVERTKVLP KAPKLQASQA 780
  781 TLARQDTIDE GGEVDSSPPS RDSRVVIEGA AVSSATVGPS PPVATTSSAA AGAGVSGGPG 840
  841 SGGTVVAIVT KADRNLALER ERQIEMASSR ATTSDTYDTG LRETPPTLAQ RDLVATVLDM 900
  901 KVDVRLELQR MQQRIGRIED LLGELVKRLA PGASSGGNAP DNSSGQTTPG DEICAGCGAG 960
  961 GGGTPTTQAP PTSAVTSPVD TVITISSPGA SGSGSGTGAG AGSAVAGAGG AGLLDPGATV1020
 1021 VSSAGGNGLG PLMLKKRRSK SGKAPAPPEQ TLASTAGTAT AAPAGVAGSG MTSSAPASAD1080
 1081 QQQQHQSAAD QSPTTPGAEL LHLRLLEEDF TAAQLPSTSS GGAGGGGGSG SGATPTTPPP1140
 1141 TIAGGSGSGT PTSTTATTTP TGSGTATRGK LDFL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle