YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNA5_MUSPF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIALVPLEN GGAMTVRGGG EAGTGCSQAI GGELQCPPTA GLSDGPKEPA PRARGTQRGV  60
   61 DPGGRPLPPL PQDPQQPRRL PPEDEEGEGD PALGMAEDQV LGAGSLHHQR VLINISGLRF 120
  121 ETQLGTLAQF PNTLLGDPAK RLRYFDPLRN EYFFDRNRPS FDGILYYYQS GGRLRRPVNV 180
  181 SLDVFADEIR FYQLGDEAME RFREDEGFIK EEEKPLPRNE FQRQVWLIFE YPESSGSARG 240
  241 IAIVSVLVIL ISIITFCLET LPEFRDEREL LRHPPVPHQP LGPSRGANGS GPLAPPSGPT 300
  301 VAPLLPRTLA DPFFIVETTC VIWFTFELLV RFFACPSKAE FSRNIMNIID VVAIFPYFIT 360
  361 LGTELAEQPG GGGGGQNGQQ AMSLAILRVI RLVRVFRIFK LSRHSKGLQI LGKTLQASMR 420
  421 ELGLLIFFLF IGVILFSSAV YFAEADNQET HFSSIPDAFW WAVVTMTTVG YGDMRPVTVG 480
  481 GKIVGSLCAI AGVLTIALPV PVIVSNFNYF YHRETDHEEQ AALKEEQGSQ SHGTGLDSGG 540
  541 PRKASWSKGS LCKAGVSLEN ADGARRGSCP LEKCNLKAKS NVDLRRSLYA LCLDTSRETD 600
  601 L

Type	Start	End	Confidence
Cytoplasmic	1	235	0.59
Transmembrane Helix	236	258	0.81
Non-Cytoplasmic	259	312	0.63
Transmembrane Helix	313	333	0.69
Cytoplasmic	334	344	0.81
Transmembrane Helix	345	363	0.82
Non-Cytoplasmic	364	379	0.73
Transmembrane Helix	380	398	0.79
Cytoplasmic	399	421	0.90
Transmembrane Helix	422	443	0.94
Non-Cytoplasmic	444	457	0.75
Transmembrane Helix	458	472	0.85
Cytoplasmic	473	482	0.62
Transmembrane Helix	483	503	0.91
Non-Cytoplasmic	504	601	0.85