YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHSA_AMPQU
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	448	0.81
Transmembrane Helix	449	467	0.62
Cytoplasmic	468	546	0.80
Transmembrane Helix	547	565	0.81
Non-Cytoplasmic	566	582	0.87
Transmembrane Helix	583	606	0.85
Cytoplasmic	607	619	0.81
Transmembrane Helix	620	641	0.92
Non-Cytoplasmic	642	655	0.83
Transmembrane Helix	656	678	0.91
Cytoplasmic	679	697	0.92
Transmembrane Helix	698	721	0.92
Non-Cytoplasmic	722	728	0.82
Transmembrane Helix	729	750	0.83
Cytoplasmic	751	828	0.95
Transmembrane Helix	829	850	0.89
Non-Cytoplasmic	851	872	0.87
Transmembrane Helix	873	896	0.84
Cytoplasmic	897	910	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRQGPSRS PWAPTQRRRL ATDCPCSRVY VLAHTAAAVA NSEQYSVENI PYAGGNYHDD  60
   61 YDPRPGGRRH DSDYSLDPNA HHDAYYSQPY DPAPHDASPG GAYGTQPDHY WQDDDVGRPM 120
  121 IQGANAYGPD PHDPDRDPHP DDPFHDEPAP TPTPAPIKRW KTVKEVQLFK GNLVLDCPIP 180
  181 PRLLNQVPHA QPPERDEFTH MRYSAATCDP ADFDAERFTL RQKLFAKPRH TELFIVITMY 240
  241 NEEDELFART MTGVIKNIEY MNSRTNSKTW GKDAWKKIVV CVVSDGRAKI NPRTRAVLAA 300
  301 LGVYQDGIAK QQVNGKDVTA HIYEYTTQMT LDIKKGVVGV KKGNTPVQML FCLKEKNQKK 360
  361 INSHRWFFQA FGQVLDPNIC VLIDAGTKPG KDSVYQLWKA FDLEPMCAGA CGEIKAMLVH 420
  421 GKKLLNPLVA TQNFEYKMSN ILDKPLESAF GFITVLPGAF SAYRYVALQN DKAGQGPLEK 480
  481 YFAGEKMHGA NAGIFTANMY LAEDRILCFE LVSKRNCHWI LQYVKSATGE TDVPTTMAEF 540
  541 ISQRRRWLNG SFFAAVYALA HSFDIFRSDH SFLRKTMFLV EFVYQTISML FAWFALGNFF 600
  601 LVFRILTASL QNELGTAGKV LFIVFEWLYI AVLITCFILS LGNRPQGSNK WYMSMVYFWG 660
  661 VIMAYLMFAS IFITVRSIQS QIRNNGGFNA SDLLKDKIFA TLIISLLSTY VMWLVVSIIF 720
  721 LDPWHMFTSF IQYLLMTPTY INILNVYAFC NTHDITWGTK GDDKPEKLPS VTTKADGKAD 780
  781 IHAPTDDADL NTQYETELHV FSTKWKEEKK VPSPGEKQED YYRGFRSGVV LFWMFCNLAL 840
  841 TALVLQAGGL ELTVSDPDEA QEKQNQASTI YLAVVLYSVA GLAAFRFIGA MWFLVVRMVS 900
  901 ATCRFTSPIY