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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHS3_NEUCR
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPRMHTAPP AGHPIQPGYQ LEDNPYHHQQ GFDIPAGPGR YSPGDALHIQ TPQPIEGMGG  60
   61 YNAPGQHYTP DYAVNPEEHH DAYYNQPYEP QVGHDPYAAA PTPPVAGYQA HDDQRPMLMH 120
  121 TDSQVGQSDP YHDEPQPPTN NAPIKRWKTV KQVLLYRGNL VLDCPIPPKL LNQLPHGERD 180
  181 EFTHMRYSAA TCDPSEFYEE NFTLRQKLFS KPRHTELFIV VTMYNEDEIL FARTMIGVFK 240
  241 NIEYMCKRTE SKTWGKDAWK KIVVCVVSDG RAKINPRTRA LLAGMGVYQE GIAKQQVNGK 300
  301 DVTAHIYEYT TQVGMTIKND VVQLIPKQQP VQMLFCLKEK NQKKINSHRW FFQAFGRVLD 360
  361 PNICVLIDAG TKPGGSSIYH LWKAFDLEPM CAGACGEIKA MLGTGGKNLI NPLVATQNFE 420
  421 YKMSNILDKP LESAFGFISV LPGAFSAYRY VALQNDKNGQ GPLEKYFAGE KLHGGDAGIF 480
  481 TANMYLAEDR ILCFELVTKR NCHWILQYVK SATGETDVPA DLTELILQRR RWLNGSFFAA 540
  541 IYAIVHFHQF FRSDHSFLRK IAFFIEFVFQ TVNMIFAWFA IGNFFLVFKI LTTGLGDEKL 600
  601 LGTVGQILGV VFAWAYGVTL ITCFVLSMGN RPAGSPRLYM GMVVFWAIIF IYLMFAAIYI 660
  661 AVVAIQTDVQ KGLSFTDLFR NELFYTLIVS VVSTYGIWLI ASLLMFDPWH MVTSMVQYML 720
  721 LSPTYTNVLN VYAFCNTHDI SWGTKGDDKP DKLPSVNTKD GQGKTDLPDE GDLNASYERE 780
  781 LQVFSRKYVK PVTAPTSAQL EEKQMDYYRG VRSMVVLVWM ITNFALCAVV LSTAGLERID 840
  841 PEEGSQEQQT TKRATIYMSV VLWSVAVLSG FKFVGACWFL VVRMFRGV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle