YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHAA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.93
Transmembrane Helix	15	32	0.93
Non-Cytoplasmic	33	38	0.74
Transmembrane Helix	39	58	0.95
Cytoplasmic	59	71	0.83
Transmembrane Helix	72	94	0.90
Non-Cytoplasmic	95	105	0.84
Transmembrane Helix	106	127	0.92
Cytoplasmic	128	142	0.79
Transmembrane Helix	143	161	0.95
Non-Cytoplasmic	162	168	0.72
Transmembrane Helix	169	188	0.94
Cytoplasmic	189	220	0.96
Transmembrane Helix	221	240	0.92
Non-Cytoplasmic	241	255	0.79
Transmembrane Helix	256	276	0.88
Cytoplasmic	277	289	0.78
Transmembrane Helix	290	311	0.96
Non-Cytoplasmic	312	318	0.80
Transmembrane Helix	319	340	0.88
Cytoplasmic	341	345	0.83
Transmembrane Helix	346	364	0.86
Non-Cytoplasmic	365	366	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAQEAVKT RHKETSLIFP VLALVVLFLW GSSQTLPVVI AINLLALIGI LSSAFSVVRH  60
   61 ADVLAHRLGE PYGSLILSLS VVILEVSLIS ALMATGDAAP TLMRDTLYSI IMIVTGGLVG 120
  121 FSLLLGGRKF ATQYMNLFGI KQYLIALFPL AIIVLVFPMA LPAANFSTGQ ALLVALISAA 180
  181 MYGVFLLIQT KTHQSLFVYE HEDDSDDDDP HHGKPSAHSS LWHAIWLIIH LIAVIAVTKM 240
  241 NASSLETLLD SMNAPVAFTG FLVALLILSP EGLGALKAVL NNQVQRAMNL FFGSVLATIS 300
  301 LTVPVVTLIA FMTGNELQFA LGAPEMVVMV ASLVLCHISF STGRTNVLNG AAHLALFAAY 360
  361 LMTIFA