YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134142085
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGISVQRAC NSCFTSAQHL NSSADTISHS HAENEDDELL KYIWREYLHP KQYEWVLIAG  60
   61 YILVFLVSLV GNTLVCFAVW KNHHMRTVTN YFIVNLSFAD ILVTITCLPA SLVVDITETW 120
  121 FFGQTLCKIL PYLQTISVSV SVLTLSCIAQ DRWYAICHPL KFKSTAKRAR KSIVLIWLVS 180
  181 CIMMIPQAVV MESSSLMPEL TNKTSLFTVC DEQXPDEIYP KVYHTCFFIV TYFAPLCLMV 240
  241 LAYIQICHKL WCQQIPGSSS VLQRQWKSLQ CSAHAVGSGE SVKVRTSTVS AEAKQVKARR 300
  301 KTARMLMVVL FVFAPCYLPI SILNIMKRVF GAFKNTGNRE TVYAWFTFSH WLIYANSAAN 360
  361 PIIYNFLRGK FREEFKAAFI CQCSGRGETH KQRARGRTST DSRKSLSTQV NNLDNISRIS 420
  421 DQAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.92
Transmembrane Helix	57	80	0.92
Cytoplasmic	81	90	0.84
Transmembrane Helix	91	113	0.89
Non-Cytoplasmic	114	129	0.86
Transmembrane Helix	130	153	0.82
Cytoplasmic	154	172	0.89
Transmembrane Helix	173	191	0.95
Non-Cytoplasmic	192	224	0.95
Transmembrane Helix	225	247	0.87
Cytoplasmic	248	304	0.97
Transmembrane Helix	305	325	0.92
Non-Cytoplasmic	326	346	0.88
Transmembrane Helix	347	367	0.87
Cytoplasmic	368	424	0.96