YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|154744770
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHSLRYFHT AVSRPGLGEP RFIIVGYVDD TEFVRYDSDA ENPRYEPRVG WMEREGPEYW  60
   61 ERETLMVKEN EQVYRVSLRT LLRYYNQSEG GSHTIQWMSG CDVGSDGSLL RGYDQFAYDG 120
  121 RDYLALNEDL KTWMAADTAA QMTRNKWDQA GEAERHKAYL QGTCVEWLRR YLELGKETLL 180
  181 RSDPPKAHVT LHPRPEGDVT LRCWALGFYP AGIFLTWLLN GEDLTQDMEL VETRPAGDGT 240
  241 FQKWASVVVP LGKEQNYTCL VEHEGLPDPP TLRWEAPPST DPNMETTVIY VVVGAVVITG 300
  301 AVTMIGALLT VVR

Type	Start	End	Confidence
Cytoplasmic	1	199	0.69
Transmembrane Helix	200	219	0.60
Non-Cytoplasmic	220	287	0.91
Transmembrane Helix	288	311	0.93
Cytoplasmic	312	313	0.75