YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDSA_SHIFL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAAWEWGQL SGFTTRSQRV WLAVLCGLLL ALMLFLLPEY HRNIHQPLVE ISLWASLGWW  60
   61 IVALLLVLFY PGSAAIWRNS KTLRLIFGVL TIVPFFWGML ALRAWHYDEN HYSGAIWLLY 120
  121 VMILVWGADS GAYMFGKLFG KHKLAPKVSP GKTWQGFIGG LATAAVISWG YGMWANLDVA 180
  181 PVTLLICSIV AALASVLGDL TESMFKREAG IKDSGHLIPG HGGILDRIDS LTAAVPVFAC 240
  241 LLLLVFRTL

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	38	0.96
Non-Cytoplasmic	39	52	0.83
Transmembrane Helix	53	74	0.87
Cytoplasmic	75	84	0.75
Transmembrane Helix	85	105	0.93
Non-Cytoplasmic	106	114	0.82
Transmembrane Helix	115	136	0.92
Cytoplasmic	137	152	0.91
Transmembrane Helix	153	173	0.92
Non-Cytoplasmic	174	179	0.80
Transmembrane Helix	180	201	0.88
Cytoplasmic	202	227	0.88
Transmembrane Helix	228	246	0.69
Non-Cytoplasmic	247	249	0.54