YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDH_ECOL6
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAGLLFLV MIVIAVVAAG IGYWKLTGEE SDTLRKIVLE QCLPNQQENQ NPSPCAEVKP  60
   61 NAGYVVLKDR HGPLQYLLMP TYRINGTESP LLTDPSTPNF FWLAWQARDF MSQKYGQPVP 120
  121 DRAVSLAINS RTGRTQNHFH IHISCIRPDV REQLDNNLAN ISSRWLPLPG GLRGHEYLAR 180
  181 RVTESELVQR SPFMMLAEEV PEAREHMGSY GLAMVRQSDN SFVLLATQRN LLTLNRASAE 240
  241 EIQDHQCEIL R

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	251	0.99