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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Cad87A-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPLGLLMI CLGLTLAKGE TNLPPVFTQT LNNIILYENV TVGTVVFRLE AYDPEGSPVT  60
   61 YGAIGADHFS VDPVSGNITL IKPLDREEKD TLKFLVSIRD RVDPEGESER DNVVEVPITF 120
  121 IILDLNDNPP EFQNTPYEAD VNEDAAVGTT IFDKITVKDR DIVGESLDLK CLPQQQSPEA 180
  181 CRKFRLHIIK RDATILEAAV VLNDTLNYNQ RMVYHFQIEA TDGPHKTQTT FEARVKDVQD 240
  241 KPPVFQGSLS TVIDEDSPIN TLVLTVHARD GDTGEPRKIV YDLRTNPNDY FLLDAQTGEL 300
  301 RTAKPLDREA LEDSTGIISL VIRARELVNG VPSDDPLTSA TAKATVTIRD VNDSPPVFNH 360
  361 KEYSVSLLEN TLPGTPLALD MSVSDADVGI NSKFALRLDD VSGVFDVEPK LVTGYSQVNI 420
  421 RVANGTLDYE NPNQRKFIVL VVAEETDTNP RLSSTATITV SVLDANDNKP VFEQESYSAS 480
  481 VSEAALPGQY IATITARDVD SGSYGDSGIR YSLSGTGAEL FHVNEQTGVI SLANCHDNGE 540
  541 SNRRERRDLN EDEHVEEDDG EGHLEMLSME AATREIGTEP TVQYTLITQA PEEQASSVPL 600
  601 PAPVPHAAPS GVPAATANDD KAPQTCLDYE SETTYFLSYK ATDDNGRGSA SVVSLRISVT 660
  661 DANDSPPVCE SPLYRASVDE GAVVFDSPLI VKARDADTMS RISYRIRGSE QVESIFDIDR 720
  721 ETGQIIIRPN ATLDVTNLNS DQLIFAVEAN DGLFTAHCGV NITVRDVNNH VPNFEQQSYS 780
  781 AVVEENSEIG TSVERVHATD LDTGKNAELR YRIQQGSFDD FGIVETTGEV FVSRKLDFDR 840
  841 RNTYQLQIQA SDQGTPSLTG TATLTINVQN SNDKDPYFVP ATQHAEVRAD APPGQLVYTL 900
  901 IALDPDVANH NALEFAGTDD ITAIDKEGKE LPHYDQFKEY FKISRNGKVS VNKQLDRNLF 960
  961 AVMRINVLVT DSTAPNVQQG RGLLIIQIID VNKNPPRFNA PWSVEQPQIK LQMVEEQPVG1020
 1021 TVLTTLQAND EDSSIGEFNI SDNDYFAINQ TSGMIYTIAR LDYEVVKEVK FQVTVSDTGV1080
 1081 PALTATADVV VDIINLNDND PKFSQSDYYF NVTENSPRGT VAGKVEAHDG DVGVFGEITY1140
 1141 TLIGENNKYF SIDAYTGNVM VANSSILDRE QIKELTLSVV AQDKAPAAVQ KSATATIHIN1200
 1201 ILDVNDNAPV FTRDVYNSTV AENAAYQPPA ALLQVQAIDQ DEGLYGDVRY IITAGNEMGL1260
 1261 FKLDAQSGIV YPAQSLSGKH GAYELTISAR DTQGSGTMES TTKAIITVLR VNRHKPEFVI1320
 1321 PALSNATIEI PGDIVQPDYL LLTVRAMDND TEENGKVSYH LQVNNRNEQQ TGEFKIDEVT1380
 1381 GELRAKTQLN RKNRANYDII LVARDAGNPP FESLRLLSVS IVDANENRPE FPDASNPYKV1440
 1441 SINENSGRDV KIGHIQAASR SKHNRDIFYY MLLGNEDGAF YVDKLTGDIY TNKSLDREET1500
 1501 DVYTLYILAS IKADLHISEE ERASFSIKTL NRDNTVAKVA ITVLDVNDNP PVFEKPIYYA1560
 1561 GVNANAKMGA AITLVNATDA DQGKNAKIEF MIVASNLYKF GATKSTGSIV PSPFAISQDG1620
 1621 RISANTIMAE YNQDRFELEI VARELEQPQS SASTKVNIWV FDGTQLVRVI LSRPPEEVYQ1680
 1681 EQEEIIAELR NATQHRIIVD EIRFHLDSIG RIRMDWCDLY FHAVDPQTQQ IAPVDEILKD1740
 1741 IDRNYDYLKD YYAGFAIENV VPAYIAIVQD EFDLAVAGLV ALVIVLFVGV ISFIVLCCCL1800
 1801 KHWNLSVPVE TRRKEALIKK QIIEDLNTTE NPLWIEQKLK LYEEQELTMQ VFSEPDHISN1860
 1861 SEAPGHLDHR SSLEQVHHVG QTVDNTYATI QPRNNQNRLT GGGGAGGGSM RSGGGASAGG1920
 1921 VGGAGLLLAR VDPHMNEFAD YATLRNNRAP SLYEFTGSTF QAPIRDGDDA VAELI

YRC Informatics Platform - Version 3.0
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