YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCMF_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.84
Transmembrane Helix	8	28	0.94
Cytoplasmic	29	40	0.91
Transmembrane Helix	41	63	0.92
Non-Cytoplasmic	64	90	0.94
Transmembrane Helix	91	113	0.85
Cytoplasmic	114	120	0.87
Transmembrane Helix	121	143	0.90
Non-Cytoplasmic	144	176	0.93
Transmembrane Helix	177	198	0.91
Cytoplasmic	199	210	0.87
Transmembrane Helix	211	232	0.92
Non-Cytoplasmic	233	247	0.88
Transmembrane Helix	248	265	0.94
Cytoplasmic	266	273	0.87
Transmembrane Helix	274	294	0.92
Non-Cytoplasmic	295	311	0.80
Transmembrane Helix	312	332	0.94
Cytoplasmic	333	351	0.93
Transmembrane Helix	352	374	0.94
Non-Cytoplasmic	375	392	0.92
Transmembrane Helix	393	414	0.92
Cytoplasmic	415	423	0.86
Transmembrane Helix	424	444	0.93
Non-Cytoplasmic	445	449	0.84
Transmembrane Helix	450	472	0.90
Cytoplasmic	473	481	0.89
Transmembrane Helix	482	503	0.93
Non-Cytoplasmic	504	609	0.98
Transmembrane Helix	610	629	0.94
Cytoplasmic	630	647	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPEIGNGLL CLALGIALLL SVYPLWGVAR GDARMMASSR LFAWLLFMSV AGAFLVLVNA  60
   61 FVVNDFTVTY VASNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTFAV AIFSQRIPLD 120
  121 IVARVLAIMG MVSVGFLLFI LFTSNPFSRT LPNFPIEGRD LNPLLQDPGL IFHPPLLYMG 180
  181 YVGFSVAFAF AIASLLSGRL DSTYARFTRP WTLAAWIFLT LGIVLGSAWA YYELGWGGWW 240
  241 FWDPVENASF MPWLVGTALM HSLAVTEQRA SFKAWTLLLA ISAFSLCLLG TFLVRSGVLV 300
  301 SVHAFASDPA RGMFILAFMV LVIGGSLLLF AARGHKVRSR VNNALWSRES LLLANNVLLV 360
  361 AAMLVVLLGT LLPLVHKQLG LGSISIGEPF FNTMFTWLMV PFALLLGVGP LVRWGRDRPR 420
  421 KIRNLLIIAF ISTLVLSLLL PWLFESKVVA MTVLGLAMAC WIAVLAIAEA ALRISRGTKT 480
  481 TFSYWGMVAA HLGLAVTIVG IAFSQNYSVE RDVRMKSGDS VDIHEYRFTF RDVKEVTGPN 540
  541 WRGGVATIGV TRDGKPETVL YAEKRYYNTA GSMMTEAAID GGITRDLYAA LGEELENGAW 600
  601 AVRLYYKPFV RWIWAGGLMM ALGGLLCLFD PRYRKRVSPQ KTAPEAV