YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCG1_RABIT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTEAPKVR VTLFCILVGI VLAMTAVVSD HWAVLSPHME NHNTTCEAAH FGLWRICTKR  60
   61 IALGEDRSCG PITLPGEKNC SYFRHFNPGE SSEIFEFTTQ KEYSISAAAI SVFSLGFLIM 120
  121 GTICALMAFR KKRDYLLRPA SMFYVFAGLC LFVSLEVMRQ SVKRMIDSED TVWIEYYYSW 180
  181 SFACACAAFV LLFLGGISLL LFSLPRMPQN PWESCMDAEP EH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	33	0.83
Non-Cytoplasmic	34	104	0.99
Transmembrane Helix	105	129	0.89
Cytoplasmic	130	139	0.75
Transmembrane Helix	140	158	0.92
Non-Cytoplasmic	159	178	0.91
Transmembrane Helix	179	202	0.93
Cytoplasmic	203	222	0.96