YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|543967
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSQTSGYVD PQTEEYDESR EKSYQVLIAV SGVLSITSLL ILVLFVPSMY NYVDNISRFS  60
   61 RRDFEFCQAS ANDLETEMMS VREGLLRGRN VTKRAAGYGH YNPSMLAADS PQFQECPACC 120
  121 IPGERGPSGD SGLPALPGAP GPDGAPGRPG TTPNASCIPE RVFEPPPCLP CPQGPRGVPG 180
  181 HPGFPGDPGE YGIGGRPGSD GMPGKPGDPG LAGPIGPPGE SGPIGDKGRT PEAHVIPGPP 240
  241 GDSGLPGPWG PPGSAGMPGE DGYAGTPGEK GWPGPPGAPG PGGMPGPNGP TGEQGPSGTP 300
  301 GTCVCQDTEV VMNDEKGRVP APRDNVAPGA TGGSYEPQGG NDAAAPSAIS QSQNRRIRKW 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	26	0.87
Transmembrane Helix	27	50	0.87
Non-Cytoplasmic	51	360	0.94