YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1S_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.94
Transmembrane Helix	55	74	0.91
Non-Cytoplasmic	75	90	0.92
Transmembrane Helix	91	112	0.91
Cytoplasmic	113	121	0.82
Transmembrane Helix	122	142	0.89
Non-Cytoplasmic	143	193	0.90
Transmembrane Helix	194	214	0.93
Cytoplasmic	215	271	0.95
Transmembrane Helix	272	294	0.79
Non-Cytoplasmic	295	310	0.88
Transmembrane Helix	311	333	0.93
Cytoplasmic	334	431	0.98
Transmembrane Helix	432	451	0.93
Non-Cytoplasmic	452	465	0.88
Transmembrane Helix	466	486	0.60
Cytoplasmic	487	494	0.56
Transmembrane Helix	495	514	0.54
Non-Cytoplasmic	515	516	0.35
Transmembrane Helix	517	532	0.50
Cytoplasmic	533	558	0.68
Transmembrane Helix	559	578	0.92
Non-Cytoplasmic	579	631	0.82
Transmembrane Helix	632	653	0.87
Cytoplasmic	654	795	0.95
Transmembrane Helix	796	818	0.85
Non-Cytoplasmic	819	833	0.83
Transmembrane Helix	834	854	0.66
Cytoplasmic	855	866	0.55
Transmembrane Helix	867	890	0.74
Non-Cytoplasmic	891	922	0.62
Transmembrane Helix	923	950	0.69
Cytoplasmic	951	994	0.68
Transmembrane Helix	995	1016	0.65
Non-Cytoplasmic	1017	1040	0.58
Transmembrane Helix	1041	1067	0.85
Cytoplasmic	1068	1118	0.56
Transmembrane Helix	1119	1141	0.81
Non-Cytoplasmic	1142	1151	0.49
Transmembrane Helix	1152	1172	0.89
Cytoplasmic	1173	1181	0.57
Transmembrane Helix	1182	1202	0.73
Non-Cytoplasmic	1203	1265	0.62
Transmembrane Helix	1266	1285	0.93
Cytoplasmic	1286	1357	0.67
Transmembrane Helix	1358	1381	0.87
Non-Cytoplasmic	1382	1873	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSSPQDEG LRKKQPKKPL PEVLPRPPRA LFCLTLQNPL RKACISIVEW KPFETIILLT  60
   61 IFANCVALAV YLPMPEDDNN SLNLGLEKLE YFFLTVFSIE AAMKIIAYGF LFHQDAYLRS 120
  121 GWNVLDFIIV FLGVFTAILE QVNVIQSNTA PMSSKGAGLD VKALRAFRVL RPLRLVSGVP 180
  181 SLQVVLNSIF KAMLPLFHIA LLVLFMVIIY AIIGLELFKG KMHKTCYYIG TDIVATVENE 240
  241 KPSPCARTGS GRPCTINGSE CRGGWPGPNH GITHFDNFGF SMLTVYQCIT MEGWTDVLYW 300
  301 VNDAIGNEWP WIYFVTLILL GSFFILNLVL GVLSGEFTKE REKAKSRGTF QKLREKQQLE 360
  361 EDLRGYMSWI TQGEVMDVED LREGKLSLEE GGSDTESLYE IEGLNKIIQF IRHWRQWNRV 420
  421 FRWKCHDLVK SRVFYWLVIL IVALNTLSIA SEHHNQPLWL THLQDIANRV LLSLFTIEML 480
  481 LKMYGLGLRQ YFMSIFNRFD CFVVCSGILE LLLVESGAMT PLGISVLRCI RLLRLFKITK 540
  541 YWTSLSNLVA SLLNSIRSIA SLLLLLFLFI IIFALLGMQL FGGRYDFEDT EVRRSNFDNF 600
  601 PQALISVFQV LTGEDWNSVM YNGIMAYGGP SYPGVLVCIY FIILFVCGNY ILLNVFLAIA 660
  661 VDNLAEAESL TSAQKAKAEE RKRRKMSRGL PDKTEEEKSV MAKKLEQKPK GEGIPTTAKL 720
  721 KVDEFESNVN EVKDPYPSAD FPGDDEEDEP EIPVSPRPRP LAELQLKEKA VPIPEASSFF 780
  781 IFSPTNKVRV LCHRIVNATW FTNFILLFIL LSSAALAAED PIRAESVRNQ ILGYFDIAFT 840
  841 SVFTVEIVLK MTTYGAFLHK GSFCRNYFNI LDLLVVAVSL ISMGLESSTI SVVKILRVLR 900
  901 VLRPLRAINR AKGLKHVVQC VFVAIRTIGN IVLVTTLLQF MFACIGVQLF KGKFFSCNDL 960
  961 SKMTEEECRG YYYVYKDGDP TQMELRPRQW IHNDFHFDNV LSAMMSLFTV STFEGWPQLL1020
 1021 YRAIDSNEED MGPVYNNRVE MAIFFIIYII LIAFFMMNIF VGFVIVTFQE QGETEYKNCE1080
 1081 LDKNQRQCVQ YALKARPLRC YIPKNPYQYQ VWYVVTSSYF EYLMFALIML NTICLGMQHY1140
 1141 HQSEEMNHIS DILNVAFTII FTLEMILKLL AFKARGYFGD PWNVFDFLIV IGSIIDVILS1200
 1201 EIDTFLASSG GLYCLGGGCG NVDPDESARI SSAFFRLFRV MRLIKLLSRA EGVRTLLWTF1260
 1261 IKSFQALPYV ALLIVMLFFI YAVIGMQMFG KIALVDGTQI NRNNNFQTFP QAVLLLFRCA1320
 1321 TGEAWQEILL ACSYGKLCDP ESDYAPGEEY TCGTNFAYYY FISFYMLCAF LIINLFVAVI1380
 1381 MDNFDYLTRD WSILGPHHLD EFKAIWAEYD PEAKGRIKHL DVVTLLRRIQ PPLGFGKFCP1440
 1441 HRVACKRLVG MNMPLNSDGT VTFNATLFAL VRTALKIKTE GNFEQANEEL RAIIKKIWKR1500
 1501 TSMKLLDQVI PPIGDDEVTV GKFYATFLIQ EHFRKFMKRQ EEYYGYRPKK DTVQIQAGLR1560
 1561 TIEEEAAPEI RRTISGDLTA EEELERAMVE AAMEERIFRR TGGLFGQVDT FLERTNSLPP1620
 1621 VMANQRPLQF AEIEMEELES PVFLEDFPQD ARTNPLARAN TNNANANVAY GNSNHSNNQM1680
 1681 FSSVHCEREF PGEAETPAAG RGALSHSHRA LGPHSKPCAG KLNGQLVQPG MPINQAPPAP1740
 1741 CQQPSTDPPE RGQRRTSLTG SLQDEAPQRR SSEGSTPRRP APATALLIQE ALVRGGLDTL1800
 1801 AADAGFVTAT SQALADACQM EPEEVEVAAT ELLKARESVQ GMASVPGSLS RRSSLGSLDQ1860
 1861 VQGSQETLIP PRP