YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CB21_GOSHI
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAIQQSA FAGQTALKQS NELVCKIGAV GGGRVSMRRT VKSAPTSIWY GPDRPKYLGP  60
   61 FSDQIPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI HCRWAMLGAL GCVFPEILSK 120
  121 NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WACQVVLMGF VEGYRVGGGP 180
  181 LGEGLDPIYP GGAFDPLGLA DDPDAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPIE 240
  241 NLFDHLADPV ANNAWAYATN FVPGK

Type	Start	End	Confidence
Cytoplasmic	1	99	0.66
Transmembrane Helix	100	118	0.50
Non-Cytoplasmic	119	150	0.82
Transmembrane Helix	151	171	0.52
Cytoplasmic	172	218	0.63
Transmembrane Helix	219	234	0.49
Non-Cytoplasmic	235	265	0.76