YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CASB_PIG
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLILACFV ALALARAKEE LNASGETVES LSSSEESITH ISKEKIEKLK REEQQQTENE  60
   61 RQNKIHQFPQ PQPLAHPYTE PIPYPILPQN ILPLAQVPVV VPLLHPEVMK DSKAKETIVP 120
  121 KRKGMPFPKS PAEPFVEGQS LTLTDFEVLS LPLLQSLMHQ IPQPVPQTPM FAPQPLLSLP 180
  181 QAKVLPVPQQ VVPFPQRDMP FQALLLYQDP LLGPLQGFYP VPQPVAPVYN PV

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	232	0.99