YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25291405
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSDAMPAL LVLADGTAYR GWSFGATGTT IGEVVFNTGM TGYQEVLTDP SYRGQIVVFT  60
   61 YPELGNTGVN PEDEESARPQ VRGAIARNIC HKPSNWRSTQ SLPDYLKQHH IPGIFGIDTR 120
  121 ALTRKIRMYG AMNGGISTEI LDEAELLEQV QAAPNMAGLN LVREVTTSTV YEWSDPTTAV 180
  181 WEFNPDGTVK NGESLTVVAL DFGVKRNILR RLASYGCRVI VVPADTSPEE ILKYNPDGIF 240
  241 LSNGPGDPSA VTEGITTAKA LLESEKPIFG ICMGHQILGH ALGAETFKLK FGHRGLNQPA 300
  301 GLTQRVEITS QNHSFAIDPD SLPEAVVEIS HLNLNDRTVA GLRHKSLPIF SVQYHPEASP 360
  361 GPHDADYLFA QFVHQMRTTK QATTAEVS

Type	Start	End	Confidence
Signal Peptide	1	18	0.65
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	388	0.99