YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAR3_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLNTTSTA ALTGMTKQEN DASYAVLLIA DFTSIIGCTL VLLGFWRLKL LRNHITKIIT  60
   61 FFCSTSLAKD LISTILTLIE KKQSNGSFQC YLYATVITYG SLACWLWTLC LSFSIYNLIV 120
  121 KREPEPEKFE KYYHVFCWVV PFIMSVIMLS KGVIEVTGNW CWIGNTYVGY RFGLFYGPFL 180
  181 AIWFLAAVLV GLTSRYTYKV IRSSVSDNKD RHMTYQFKLI NYIIVFLLCW VFAVINRIVN 240
  241 GLNMFPAWVS ILHTYLSVSH GFYASVTFIY NNPLMWRYLA SIILIPFTKF GYFVETQQRL 300
  301 EKNKNNNNHS PVGLSNNAQN NNHHHNHNNN HNNNHNNHNN NNNNNNSDFV NNDSSNYYTA 360
  361 SMIESFSVQN ENSKSINGAD NFKQNGASQQ DDKDSPNSNN NNNNNNNNNN NNNNNNNNNN 420
  421 NNNNYNNKDI EPIDNCNTNS IPMDNIATRI EIPPQHPTLT PQQSLQEINL NDDDNKINTH 480
  481 QSNKKKDSNV

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.81
Transmembrane Helix	24	46	0.91
Cytoplasmic	47	57	0.68
Transmembrane Helix	58	79	0.76
Non-Cytoplasmic	80	95	0.87
Transmembrane Helix	96	120	0.84
Cytoplasmic	121	131	0.98
Transmembrane Helix	132	154	0.91
Non-Cytoplasmic	155	173	0.93
Transmembrane Helix	174	198	0.86
Cytoplasmic	199	218	0.91
Transmembrane Helix	219	239	0.91
Non-Cytoplasmic	240	246	0.80
Transmembrane Helix	247	267	0.75
Cytoplasmic	268	273	0.62
Transmembrane Helix	274	293	0.73
Non-Cytoplasmic	294	490	0.65