YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: L1CA1_DANRE
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFRQRDPSPS FRWVKDGKQF GEVLSESGTL TPHPTMDLHF YQGTYRCYAA NELGTAVSNL  60
   61 VHLTTEPVPS LAKVKKQKRR AYEVGESAVL RCNPPKSSVT PKIHWMDMQF HHIPLNERVT 120
  121 ISRDGNLYFA NLIANDSRDD YTCNAHYINA SIILPKEPMS IYVTPSNSVV KNRRAKLHHP 180
  181 AGARSSYLVL RGQTLTLQCI PEGLPTPEVH WDRIDSALSP NRTKKLYNNR WLQIDNVLES 240
  241 DDGEYVCTAR NSENSVKHHY TVTVEAAPYW TRSPEEHLYA PGETVRLDCK ADGIPAPNIT 300
  301 WSINGVPVSG TDVDPRRRVS SGKLILSNVE FSDTAVYQCE AVNKHGSILI NTHVHVVELP 360
  361 AQILTPDERL YQATAGQTVM LDCRTFGSPL PKIHWEILDS IPALSNAKIS QTTNGSLKIS 420
  421 NVSEEDSNRY TCSVSETNKS ISADVEVLNR TKIVGPPQNL HVIRGSDAIL HCKYTVDHNL 480
  481 KSPTVQWNKD GHKITASTSN DKYHEIEGSL KVLDVQMEDM GIYSCEVSTT LDSDTASGYI 540
  541 TVQDKPDPPQ SLKLSEKMER SVTISWMPSV ENNSPVTEYV IEMNEGETPD EGQWQKYRSV 600
  601 SQDIDSWRSI CSYSKYHFQI RAVNSIGTSA PTESSLSYST PAAKPDTNPE NVMTLSTDPK 660
  661 SMIISWQEMD RRQFNGPGFQ YKVFWRRAAD SGAHWTESSV SNPPLMVNNT GTFVSFEIKV 720
  721 QAVNDLGAAP EPLTVIGYSG EDFPLEAPSA LSVTELQKTS VMVRWSPVRP ESVRGHLLGY 780
  781 KIYLRMKGSQ WETPGRAVSS SGNPTVIEVP ADAAEKIVSD LQFYSDYTLT ITAFNSKGEG 840
  841 PHSEESFSTP EGAPGPVLFL PFDSPSESEI TLRWEAPHKP NGEIRGYLLQ YQEVVIGSES 900
  901 PQHVESIDLP AVTEFTLKNL NPESRYTFHL SARNDAGDGA PAIQSGATLL DGEPPSVINM 960
  961 TAGETSVNLS WVPGDRHRNL GFSFRYLKKI EGAEWEESEK INSTQAFYQL QGLDSGVIYH1020
 1021 LQVLSGNTSY DWDFKTIYSP EWHKSPRNFA TEGWFIGLIS ALVLLLLVLL LLCYIKKSKG1080
 1081 GKYSVKDKEE GQGDAANQKL KDDAFGEYRS LESDMEKCSI SQPSGCESKR SSNDSLADYG1140
 1141 DSVDIQFNED GSFIGQYSGR RDPRGHDSSG AVSPVNPNMP PPSHSFPTSV TGILGPN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle