YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAHC_TOBAC
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTASINSCL TISPAQASLK KPTRPVAFAR LSNSSSSTSV PSLIRNEPVF AAPTPIINPI  60
   61 LREEMAKESY EQAIAALEKL LSEKGELGPI AAARVDQITA ELQSSDGSKP FDPVEHMKAG 120
  121 FIHFKTEKYE KNPALYGELS KGQSPKFMVF ACSDSRVCPS HVLNFQPGEA FVVRNIANMV 180
  181 PAYDKTRYSG VGAAIEYAVL HLKVENIVVI GHSACGGIKG LMSLPADGSE STAFIEDWVK 240
  241 IGLPAKAKVQ GEHVDKCFAD QCTACEKEAV NVSLGNLLTY PFVREGLVKK TLALKGGHYD 300
  301 FVNGGFELWG LEFGLSPSLS V

Type	Start	End	Confidence
Signal Peptide	1	17	0.92
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	321	0.99